IL_6WDR_037

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUUGAGUCC*GGCUCUUGG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDR|1|2|C|954
6WDR|1|2|C|955
6WDR|1|2|U|956
6WDR|1|2|U|957
6WDR|1|2|G|958
6WDR|1|2|A|959
6WDR|1|2|G|960
6WDR|1|2|U|961
6WDR|1|2|C|962
6WDR|1|2|C|963
*
6WDR|1|2|G|968
6WDR|1|2|G|969
6WDR|1|2|C|970
6WDR|1|2|U|971
6WDR|1|2|C|972
6WDR|1|2|U|973
6WDR|1|2|U|974
6WDR|1|2|G|975
6WDR|1|2|G|976

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6-A