IL_6WDR_042

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

6WDR|1|2|U|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDR_042 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.3001

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6WDR|1|2|G|1113
6WDR|1|2|G|1114
6WDR|1|2|A|1115
6WDR|1|2|C|1116
*
6WDR|1|2|G|1157
6WDR|1|2|U|1158
6WDR|1|2|U|1159
6WDR|1|2|U|1160
6WDR|1|2|U|1161

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain N

40S ribosomal protein S13

Chain b

40S ribosomal protein S27-A