IL_6WDR_045

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUAACUACUG*CAUUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDR|1|2|A|1127
6WDR|1|2|U|1128
6WDR|1|2|A|1129
6WDR|1|2|A|1130
6WDR|1|2|C|1131
6WDR|1|2|U|1132
6WDR|1|2|A|1133
6WDR|1|2|C|1134
6WDR|1|2|U|1135
6WDR|1|2|G|1136
*
6WDR|1|2|C|1143
6WDR|1|2|A|1144
6WDR|1|2|U|1145
6WDR|1|2|U|1146
6WDR|1|2|U|1147

Current chains

Chain 2

20S ribosomal RNA

Nearby chains