IL_6WDR_048

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6WDR|1|2|U|1204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDR_048 not in the Motif Atlas

Geometric match to IL_2A64_002

Geometric discrepancy: 0.3925

The information below is about IL_2A64_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

6WDR|1|2|G|1203
6WDR|1|2|U|1204
6WDR|1|2|G|1205
*
6WDR|1|2|C|1218
6WDR|1|2|C|1219

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain A

40S ribosomal protein S0-A

Chain R

40S ribosomal protein S17-A

Chain b

40S ribosomal protein S27-A