IL_6WDR_065

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAGAGAAGG*CCAUCUCAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDR|1|2|U|1840
6WDR|1|2|A|1841
6WDR|1|2|G|1842
6WDR|1|2|A|1843
6WDR|1|2|G|1844
6WDR|1|2|A|1845
6WDR|1|2|A|1846
6WDR|1|2|G|1847
6WDR|1|2|G|1848
*
6WDR|1|2|C|1857
6WDR|1|2|C|1858
6WDR|1|2|A|1859
6WDR|1|2|U|1860
6WDR|1|2|C|1861
6WDR|1|2|U|1862
6WDR|1|2|C|1863
6WDR|1|2|A|1864
6WDR|1|2|G|1865

Current chains

Chain 2

20S ribosomal RNA

Nearby chains