IL_6WDR_078
3D structure
- PDB id
- 6WDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAGCCAGCGAGUCUAAC*GUAAUCUUGUGAAACUC
- Length
- 34 nucleotides
- Bulged bases
- 6WDR|1|2|U|1643, 6WDR|1|2|A|1668, 6WDR|1|2|U|1669
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6WDR|1|2|G|1630
6WDR|1|2|A|1631
6WDR|1|2|G|1632
6WDR|1|2|C|1633
6WDR|1|2|C|1634
6WDR|1|2|A|1635
6WDR|1|2|G|1636
6WDR|1|2|C|1637
6WDR|1|2|G|1638
6WDR|1|2|A|1639
6WDR|1|2|G|1640
6WDR|1|2|U|1641
6WDR|1|2|C|1642
6WDR|1|2|U|1643
6WDR|1|2|A|1644
6WDR|1|2|A|1645
6WDR|1|2|C|1646
*
6WDR|1|2|G|1665
6WDR|1|2|U|1666
6WDR|1|2|A|1667
6WDR|1|2|A|1668
6WDR|1|2|U|1669
6WDR|1|2|C|1670
6WDR|1|2|U|1671
6WDR|1|2|U|1672
6WDR|1|2|G|1673
6WDR|1|2|U|1674
6WDR|1|2|G|1675
6WDR|1|2|A|1676
6WDR|1|2|A|1677
6WDR|1|2|A|1678
6WDR|1|2|C|1679
6WDR|1|2|U|1680
6WDR|1|2|C|1681
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain F
- 40S ribosomal protein S5
- Chain Q
- 40S ribosomal protein S16-A
- Chain T
- 40S ribosomal protein S19-A
- Chain U
- 40S ribosomal protein S20
- Chain Z
- 40S ribosomal protein S25-A
- Chain d
- 40S ribosomal protein S29-A
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