IL_6WDR_083

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAAAUA*UUCUUAG

Length

14 nucleotides

Bulged bases

6WDR|1|2|A|1498, 6WDR|1|2|U|1499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDR|1|2|C|1494
6WDR|1|2|U|1495
6WDR|1|2|A|1496
6WDR|1|2|A|1497
6WDR|1|2|A|1498
6WDR|1|2|U|1499
6WDR|1|2|A|1500
*
6WDR|1|2|U|1529
6WDR|1|2|U|1530
6WDR|1|2|C|1531
6WDR|1|2|U|1532
6WDR|1|2|U|1533
6WDR|1|2|A|1534
6WDR|1|2|G|1535

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16-A

Chain U

40S ribosomal protein S20

Chain g

Guanine nucleotide-binding protein subunit beta-like protein