IL_6WLT_010

3D structure

PDB id

6WLT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Apo V. cholerae glycine riboswitch models, 4.8 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GCAAG*UGAAAC

Length

11 nucleotides

Bulged bases

6WLT|1|A|A|203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WLT_010 not in the Motif Atlas

Homologous match to IL_3OXE_004

Geometric discrepancy: 0.0399

The information below is about IL_3OXE_004

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

UAA/GAN with extra stack

Motif group

IL_78154.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6WLT|1|A|G|176
6WLT|1|A|C|177
6WLT|1|A|A|178
6WLT|1|A|A|179
6WLT|1|A|G|180
*
6WLT|1|A|U|199
6WLT|1|A|G|200
6WLT|1|A|A|201
6WLT|1|A|A|202
6WLT|1|A|A|203
6WLT|1|A|C|204

Current chains

Chain A

RNA (231-MER)

Nearby chains