IL_6WLT_173

3D structure

PDB id

6WLT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Apo V. cholerae glycine riboswitch models, 4.8 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGAAG*UCAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WLT_173 not in the Motif Atlas

Geometric match to IL_4WF9_075

Geometric discrepancy: 0.3401

The information below is about IL_4WF9_075

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

6WLT|18|A|C|62
6WLT|18|A|G|63
6WLT|18|A|A|64
6WLT|18|A|A|65
6WLT|18|A|G|66
*
6WLT|18|A|U|78
6WLT|18|A|C|79
6WLT|18|A|A|80
6WLT|18|A|G|81

Current chains

Chain A

RNA (231-MER)

Nearby chains