IL_6WLU_112

3D structure

PDB id

6WLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

V. cholerae glycine riboswitch with glycine models, 5.7 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GCAAG*UGAAAC

Length

11 nucleotides

Bulged bases

6WLU|11|A|A|203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WLU_112 not in the Motif Atlas

Geometric match to IL_3OXE_004

Geometric discrepancy: 0.0428

The information below is about IL_3OXE_004

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

UAA/GAN with extra stack

Motif group

IL_78154.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6WLU|11|A|G|176
6WLU|11|A|C|177
6WLU|11|A|A|178
6WLU|11|A|A|179
6WLU|11|A|G|180
*
6WLU|11|A|U|199
6WLU|11|A|G|200
6WLU|11|A|A|201
6WLU|11|A|A|202
6WLU|11|A|A|203
6WLU|11|A|C|204

Current chains

Chain A

RNA (231-MER)

Nearby chains