IL_6WNV_100

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6WNV|1|4|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_100 not in the Motif Atlas

Geometric match to IL_5J7L_279

Geometric discrepancy: 0.0998

The information below is about IL_5J7L_279

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6WNV|1|4|G|1011
6WNV|1|4|U|1012
6WNV|1|4|C|1013
*
6WNV|1|4|G|1277
6WNV|1|4|C|1278

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L13

Chain q

50S ribosomal protein L20