IL_6WNV_101

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_101 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1592

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6WNV|1|4|U|1018
6WNV|1|4|U|1019
6WNV|1|4|A|1020
6WNV|1|4|A|1021
6WNV|1|4|G|1022
6WNV|1|4|U|1023
6WNV|1|4|G|1024
*
6WNV|1|4|C|1268
6WNV|1|4|U|1269
6WNV|1|4|A|1270
6WNV|1|4|A|1271
6WNV|1|4|A|1272

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain j

50S ribosomal protein L13