IL_6WNV_107

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

6WNV|1|4|U|1161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_107 not in the Motif Atlas

Geometric match to IL_7RQB_041

Geometric discrepancy: 0.1722

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

6WNV|1|4|G|1159
6WNV|1|4|A|1160
6WNV|1|4|U|1161
6WNV|1|4|G|1162
*
6WNV|1|4|C|1249
6WNV|1|4|G|1250
6WNV|1|4|C|1251

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36