IL_6WNV_125

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGUAG*UGAGGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_125 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3761

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6WNV|1|4|G|1601
6WNV|1|4|U|1602
6WNV|1|4|G|1603
6WNV|1|4|U|1604
6WNV|1|4|A|1605
6WNV|1|4|G|1606
*
6WNV|1|4|U|1641
6WNV|1|4|G|1642
6WNV|1|4|A|1643
6WNV|1|4|G|1644
6WNV|1|4|G|1645
6WNV|1|4|C|1646

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains