IL_6WNV_136

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

6WNV|1|4|A|2109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_136 not in the Motif Atlas

Geometric match to IL_7A0S_064

Geometric discrepancy: 0.1395

The information below is about IL_7A0S_064

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

6WNV|1|4|G|1898
6WNV|1|4|C|1899
*
6WNV|1|4|G|2108
6WNV|1|4|A|2109
6WNV|1|4|U|2110

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2