IL_6WNV_137

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6WNV|1|4|A|1929, 6WNV|1|4|C|1944, 6WNV|1|4|U|1948

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_137 not in the Motif Atlas

Geometric match to IL_7RQB_070

Geometric discrepancy: 0.091

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6WNV|1|4|U|1926
6WNV|1|4|G|1927
6WNV|1|4|C|1928
6WNV|1|4|A|1929
6WNV|1|4|A|1930
6WNV|1|4|A|1931
6WNV|1|4|C|1932
*
6WNV|1|4|G|1941
6WNV|1|4|G|1942
6WNV|1|4|A|1943
6WNV|1|4|C|1944
6WNV|1|4|G|1945
6WNV|1|4|U|1946
6WNV|1|4|A|1947
6WNV|1|4|U|1948
6WNV|1|4|A|1949

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2