IL_6WNV_151

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUGAUGUGUAGGAUAGG*CCCUUUAA

Length

25 nucleotides

Bulged bases

6WNV|1|4|U|2239, 6WNV|1|4|U|2246, 6WNV|1|4|A|2247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WNV|1|4|U|2233
6WNV|1|4|U|2234
6WNV|1|4|G|2235
6WNV|1|4|A|2236
6WNV|1|4|U|2237
6WNV|1|4|G|2238
6WNV|1|4|U|2239
6WNV|1|4|G|2240
6WNV|1|4|U|2241
6WNV|1|4|A|2242
6WNV|1|4|G|2243
6WNV|1|4|G|2244
6WNV|1|4|A|2245
6WNV|1|4|U|2246
6WNV|1|4|A|2247
6WNV|1|4|G|2248
6WNV|1|4|G|2249
*
6WNV|1|4|C|2305
6WNV|1|4|C|2306
6WNV|1|4|C|2307
6WNV|1|4|U|2308
6WNV|1|4|U|2309
6WNV|1|4|U|2310
6WNV|1|4|A|2311
6WNV|1|4|A|2312

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L1