IL_6WNV_179

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_179 not in the Motif Atlas

Geometric match to IL_4KNQ_004

Geometric discrepancy: 0.299

The information below is about IL_4KNQ_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

6WNV|1|4|U|870
6WNV|1|4|U|871
6WNV|1|4|U|872
*
6WNV|1|4|A|905
6WNV|1|4|U|906
6WNV|1|4|G|907

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains