IL_6WNV_181

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_181 not in the Motif Atlas

Geometric match to IL_4WF9_117

Geometric discrepancy: 0.0824

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6WNV|1|4|G|1794
6WNV|1|4|G|1795
6WNV|1|4|A|1796
6WNV|1|4|A|1797
6WNV|1|4|C|1798
6WNV|1|4|U|1799
6WNV|1|4|A|1800
6WNV|1|4|G|1801
6WNV|1|4|G|1802
*
6WNV|1|4|C|2118
6WNV|1|4|U|2119
6WNV|1|4|G|2120
6WNV|1|4|U|2121
6WNV|1|4|C|2122

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain k

50S ribosomal protein L14