IL_6WNV_184

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUAC

Length

35 nucleotides

Bulged bases

6WNV|1|4|A|2254, 6WNV|1|4|U|2260, 6WNV|1|4|G|2261, 6WNV|1|4|U|2300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WNV|1|4|G|2252
6WNV|1|4|G|2253
6WNV|1|4|A|2254
6WNV|1|4|G|2255
6WNV|1|4|G|2256
6WNV|1|4|C|2257
6WNV|1|4|U|2258
6WNV|1|4|U|2259
6WNV|1|4|U|2260
6WNV|1|4|G|2261
6WNV|1|4|A|2262
6WNV|1|4|A|2263
6WNV|1|4|G|2264
6WNV|1|4|U|2265
*
6WNV|1|4|A|2282
6WNV|1|4|U|2283
6WNV|1|4|G|2284
6WNV|1|4|G|2285
6WNV|1|4|A|2286
6WNV|1|4|G|2287
6WNV|1|4|C|2288
6WNV|1|4|C|2289
6WNV|1|4|G|2290
6WNV|1|4|A|2291
6WNV|1|4|C|2292
6WNV|1|4|C|2293
6WNV|1|4|U|2294
6WNV|1|4|U|2295
6WNV|1|4|G|2296
6WNV|1|4|A|2297
6WNV|1|4|A|2298
6WNV|1|4|A|2299
6WNV|1|4|U|2300
6WNV|1|4|A|2301
6WNV|1|4|C|2302

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L1