IL_6WNW_096

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNW_096 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.2205

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6WNW|1|4|G|875
6WNW|1|4|C|876
6WNW|1|4|A|877
6WNW|1|4|A|878
6WNW|1|4|G|879
*
6WNW|1|4|C|898
6WNW|1|4|A|899
6WNW|1|4|A|900
6WNW|1|4|C|901
6WNW|1|4|C|902

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA