IL_6WNW_102

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNW_102 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1513

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

6WNW|1|4|U|1018
6WNW|1|4|U|1019
6WNW|1|4|A|1020
6WNW|1|4|A|1021
6WNW|1|4|G|1022
6WNW|1|4|U|1023
6WNW|1|4|G|1024
*
6WNW|1|4|C|1268
6WNW|1|4|U|1269
6WNW|1|4|A|1270
6WNW|1|4|A|1271
6WNW|1|4|A|1272

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain j

50S ribosomal protein L13