IL_6WNW_121

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNW_121 not in the Motif Atlas

Geometric match to IL_5J7L_294

Geometric discrepancy: 0.2765

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6WNW|1|4|U|1543
6WNW|1|4|G|1544
*
6WNW|1|4|C|1710
6WNW|1|4|A|1711
6WNW|1|4|U|1712
6WNW|1|4|C|1713
6WNW|1|4|A|1714
6WNW|1|4|G|1715

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains