IL_6WNW_125

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

6WNW|1|4|U|1588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNW_125 not in the Motif Atlas

Geometric match to IL_5J7L_298

Geometric discrepancy: 0.2321

The information below is about IL_5J7L_298

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6WNW|1|4|G|1578
6WNW|1|4|C|1579
*
6WNW|1|4|G|1587
6WNW|1|4|U|1588
6WNW|1|4|C|1589

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains