IL_6WNW_129

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

6WNW|1|4|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNW_129 not in the Motif Atlas

Geometric match to IL_5J7L_302

Geometric discrepancy: 0.2288

The information below is about IL_5J7L_302

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6WNW|1|4|C|1617
6WNW|1|4|A|1618
6WNW|1|4|G|1619
*
6WNW|1|4|C|1627
6WNW|1|4|G|1628

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2