IL_6WNW_135

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6WNW|1|4|G|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNW_135 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.091

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6WNW|1|4|C|1814
6WNW|1|4|G|1815
6WNW|1|4|U|1816
6WNW|1|4|A|1817
6WNW|1|4|A|1818
6WNW|1|4|C|1819
*
6WNW|1|4|G|1824
6WNW|1|4|G|1825
6WNW|1|4|A|1826
6WNW|1|4|G|1827
6WNW|1|4|A|1828
6WNW|1|4|A|1829
6WNW|1|4|G|1830

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2