IL_6WNW_157

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNW_157 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.2244

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6WNW|1|4|A|2581
6WNW|1|4|G|2582
*
6WNW|1|4|C|2626
6WNW|1|4|C|2627
6WNW|1|4|U|2628

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain c

50S ribosomal protein L3