IL_6WNW_160

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNW_160 not in the Motif Atlas

Geometric match to IL_5J7L_337

Geometric discrepancy: 0.1433

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6WNW|1|4|A|2587
6WNW|1|4|U|2588
6WNW|1|4|A|2589
*
6WNW|1|4|U|2617
6WNW|1|4|G|2618
6WNW|1|4|U|2619
6WNW|1|4|U|2620
6WNW|1|4|U|2621

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain m

50S ribosomal protein L16