IL_6WNW_176

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNW_176 not in the Motif Atlas

Geometric match to IL_5J7L_354

Geometric discrepancy: 0.1034

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6WNW|1|4|U|2975
6WNW|1|4|G|2976
6WNW|1|4|U|2977
6WNW|1|4|A|2978
6WNW|1|4|A|2979
6WNW|1|4|G|2980
*
6WNW|1|4|U|2993
6WNW|1|4|U|2994
6WNW|1|4|G|2995
6WNW|1|4|A|2996
6WNW|1|4|G|2997

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L17

Chain p

50S ribosomal protein L19