IL_6WNW_189

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUAC

Length

35 nucleotides

Bulged bases

6WNW|1|4|U|2258, 6WNW|1|4|U|2260, 6WNW|1|4|C|2289, 6WNW|1|4|U|2294, 6WNW|1|4|U|2295, 6WNW|1|4|U|2300

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WNW|1|4|G|2252
6WNW|1|4|G|2253
6WNW|1|4|A|2254
6WNW|1|4|G|2255
6WNW|1|4|G|2256
6WNW|1|4|C|2257
6WNW|1|4|U|2258
6WNW|1|4|U|2259
6WNW|1|4|U|2260
6WNW|1|4|G|2261
6WNW|1|4|A|2262
6WNW|1|4|A|2263
6WNW|1|4|G|2264
6WNW|1|4|U|2265
*
6WNW|1|4|A|2282
6WNW|1|4|U|2283
6WNW|1|4|G|2284
6WNW|1|4|G|2285
6WNW|1|4|A|2286
6WNW|1|4|G|2287
6WNW|1|4|C|2288
6WNW|1|4|C|2289
6WNW|1|4|G|2290
6WNW|1|4|A|2291
6WNW|1|4|C|2292
6WNW|1|4|C|2293
6WNW|1|4|U|2294
6WNW|1|4|U|2295
6WNW|1|4|G|2296
6WNW|1|4|A|2297
6WNW|1|4|A|2298
6WNW|1|4|A|2299
6WNW|1|4|U|2300
6WNW|1|4|A|2301
6WNW|1|4|C|2302

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L1