IL_6WPI_003
3D structure
- PDB id
- 6WPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nop9 in complex with ITS1 RNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.02 Å
Loop
- Sequence
- CUAAG*UAUG
- Length
- 9 nucleotides
- Bulged bases
- 6WPI|1|C|U|35
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WPI_003 not in the Motif Atlas
- Geometric match to IL_5XTM_001
- Geometric discrepancy: 0.0836
- The information below is about IL_5XTM_001
- Detailed Annotation
- Receptor of 11-nt loop-receptor motif
- Broad Annotation
- Loop-receptor motif
- Motif group
- IL_53448.1
- Basepair signature
- cWW-tWH-cSH-cWW
- Number of instances in this motif group
- 11
Unit IDs
6WPI|1|C|C|18
6WPI|1|C|U|19
6WPI|1|C|A|20
6WPI|1|C|A|21
6WPI|1|C|G|22
*
6WPI|1|C|U|33
6WPI|1|C|A|34
6WPI|1|C|U|35
6WPI|1|C|G|36
Current chains
- Chain C
- RNA (47-MER)
Nearby chains
- Chain B
- RNA (47-MER)
Coloring options: