IL_6WQN_020

3D structure

PDB id

6WQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQN_020 not in the Motif Atlas

Homologous match to IL_4WF9_024

Geometric discrepancy: 0.0942

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6WQN|1|1|U|748
6WQN|1|1|G|749
6WQN|1|1|A|750
6WQN|1|1|A|751
6WQN|1|1|G|752
*
6WQN|1|1|U|769
6WQN|1|1|G|770
6WQN|1|1|G|771
6WQN|1|1|A|772
6WQN|1|1|G|773

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2