IL_6WQN_055

3D structure

PDB id

6WQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6WQN|1|1|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQN_055 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.1062

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6WQN|1|1|C|1730
6WQN|1|1|G|1731
6WQN|1|1|U|1732
6WQN|1|1|A|1733
6WQN|1|1|A|1734
6WQN|1|1|C|1735
*
6WQN|1|1|G|1740
6WQN|1|1|G|1741
6WQN|1|1|A|1742
6WQN|1|1|G|1743
6WQN|1|1|A|1744
6WQN|1|1|A|1745
6WQN|1|1|G|1746

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2