IL_6WQN_087

3D structure

PDB id

6WQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

6WQN|1|1|C|2694

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQN_087 not in the Motif Atlas

Geometric match to IL_4WF9_100

Geometric discrepancy: 0.374

The information below is about IL_4WF9_100

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6WQN|1|1|U|2679
6WQN|1|1|U|2680
6WQN|1|1|A|2681
6WQN|1|1|G|2682
6WQN|1|1|U|2683
6WQN|1|1|A|2684
6WQN|1|1|C|2685
*
6WQN|1|1|G|2690
6WQN|1|1|G|2691
6WQN|1|1|A|2692
6WQN|1|1|C|2693
6WQN|1|1|C|2694
6WQN|1|1|G|2695

Current chains

Chain 1

23S rRNA

Nearby chains