IL_6WQN_088

3D structure

PDB id

6WQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQN_088 not in the Motif Atlas

Homologous match to IL_4WF9_101

Geometric discrepancy: 0.13

The information below is about IL_4WF9_101

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

6WQN|1|1|C|2707
6WQN|1|1|C|2708
6WQN|1|1|U|2709
6WQN|1|1|C|2710
6WQN|1|1|U|2711
*
6WQN|1|1|A|2752
6WQN|1|1|U|2753
6WQN|1|1|G|2754

Current chains

Chain 1

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L19

Chain L

50S ribosomal protein L3

Chain W

50S ribosomal protein L14