IL_6WQN_101

3D structure

PDB id

6WQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAU*AUCAG

Length

9 nucleotides

Bulged bases

6WQN|1|1|A|176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQN_101 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2444

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6WQN|1|1|C|152
6WQN|1|1|G|153
6WQN|1|1|A|154
6WQN|1|1|U|155
*
6WQN|1|1|A|173
6WQN|1|1|U|174
6WQN|1|1|C|175
6WQN|1|1|A|176
6WQN|1|1|G|177

Current chains

Chain 1

23S rRNA

Nearby chains