IL_6WQN_104

3D structure

PDB id

6WQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUU*GGAC

Length

7 nucleotides

Bulged bases

6WQN|1|1|G|774

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQN_104 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.2066

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6WQN|1|1|G|746
6WQN|1|1|U|747
6WQN|1|1|U|748
*
6WQN|1|1|G|773
6WQN|1|1|G|774
6WQN|1|1|A|775
6WQN|1|1|C|776

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2