IL_6WQN_110

3D structure

PDB id

6WQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGC*GCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQN_110 not in the Motif Atlas

Geometric match to IL_7ECK_023

Geometric discrepancy: 0.3514

The information below is about IL_7ECK_023

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

6WQN|1|1|G|1243
6WQN|1|1|G|1244
6WQN|1|1|G|1245
6WQN|1|1|C|1246
*
6WQN|1|1|G|1276
6WQN|1|1|C|1277
6WQN|1|1|G|1278
6WQN|1|1|C|1279

Current chains

Chain 1

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L4

Chain X

50S ribosomal protein L15