IL_6WQN_113

3D structure

PDB id

6WQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGUAAG*UGAGCU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQN_113 not in the Motif Atlas

Geometric match to IL_8P9A_410

Geometric discrepancy: 0.3671

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6WQN|1|1|A|1517
6WQN|1|1|G|1518
6WQN|1|1|U|1519
6WQN|1|1|A|1520
6WQN|1|1|A|1521
6WQN|1|1|G|1522
*
6WQN|1|1|U|1558
6WQN|1|1|G|1559
6WQN|1|1|A|1560
6WQN|1|1|G|1561
6WQN|1|1|C|1562
6WQN|1|1|U|1563

Current chains

Chain 1

23S rRNA

Nearby chains