3D structure

PDB id
6WRS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
6WRS|1|1|G|846, 6WRS|1|1|G|850
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WRS_017 not in the Motif Atlas
Geometric match to IL_4WF9_021
Geometric discrepancy: 0.116
The information below is about IL_4WF9_021
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_54041.2
Basepair signature
cWW-L-R-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

6WRS|1|1|G|719
6WRS|1|1|A|720
6WRS|1|1|A|721
6WRS|1|1|A|722
6WRS|1|1|C|723
*
6WRS|1|1|G|844
6WRS|1|1|A|845
6WRS|1|1|G|846
6WRS|1|1|A|847
6WRS|1|1|U|848
6WRS|1|1|A|849
6WRS|1|1|G|850
6WRS|1|1|C|851

Current chains

Chain 1
23S rRNA

Nearby chains

Chain S
50S ribosomal protein L4
Chain X
50S ribosomal protein L15

Coloring options:


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