IL_6WRS_043

3D structure

PDB id

6WRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

6WRS|1|1|G|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WRS_043 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1647

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6WRS|1|1|G|1356
6WRS|1|1|G|1357
6WRS|1|1|A|1358
6WRS|1|1|A|1359
6WRS|1|1|G|1360
*
6WRS|1|1|C|1368
6WRS|1|1|G|1369
6WRS|1|1|C|1370

Current chains

Chain 1

23S rRNA

Nearby chains

Chain E

uL22

Chain F

50S ribosomal protein L23