IL_6WRS_115

3D structure

PDB id

6WRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAU*GUACG

Length

8 nucleotides

Bulged bases

6WRS|1|1|A|2599, 6WRS|1|1|C|2600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WRS_115 not in the Motif Atlas

Geometric match to IL_7VFT_005

Geometric discrepancy: 0.3931

The information below is about IL_7VFT_005

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_00627.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

24

Unit IDs

6WRS|1|1|C|2539
6WRS|1|1|A|2540
6WRS|1|1|U|2541
*
6WRS|1|1|G|2597
6WRS|1|1|U|2598
6WRS|1|1|A|2599
6WRS|1|1|C|2600
6WRS|1|1|G|2601

Current chains

Chain 1

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain V

50S ribosomal protein L13