IL_6WRU_028
3D structure
- PDB id
- 6WRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WRU_028 not in the Motif Atlas
- Geometric match to IL_4WF9_031
- Geometric discrepancy: 0.0772
- The information below is about IL_4WF9_031
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.1
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6WRU|1|1|G|901
6WRU|1|1|A|902
6WRU|1|1|G|903
6WRU|1|1|G|904
6WRU|1|1|U|905
6WRU|1|1|A|906
6WRU|1|1|G|907
*
6WRU|1|1|C|960
6WRU|1|1|G|961
6WRU|1|1|A|962
6WRU|1|1|A|963
6WRU|1|1|U|964
6WRU|1|1|G|965
6WRU|1|1|C|966
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain I
- 50S ribosomal protein L27
- Chain M
- 50S ribosomal protein L30
- Chain Y
- 50S ribosomal protein L16
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