IL_6WRU_029

3D structure

PDB id

6WRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WRU_029 not in the Motif Atlas

Homologous match to IL_4WF9_032

Geometric discrepancy: 0.1365

The information below is about IL_4WF9_032

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

6WRU|1|1|G|907
6WRU|1|1|A|908
*
6WRU|1|1|U|958
6WRU|1|1|C|959
6WRU|1|1|C|960

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain I

50S ribosomal protein L27

Chain Y

50S ribosomal protein L16