IL_6WRU_058

3D structure

PDB id

6WRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6WRU|1|1|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WRU_058 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.0895

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6WRU|1|1|C|1730
6WRU|1|1|G|1731
6WRU|1|1|U|1732
6WRU|1|1|A|1733
6WRU|1|1|A|1734
6WRU|1|1|C|1735
*
6WRU|1|1|G|1740
6WRU|1|1|G|1741
6WRU|1|1|A|1742
6WRU|1|1|G|1743
6WRU|1|1|A|1744
6WRU|1|1|A|1745
6WRU|1|1|G|1746

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2