IL_6WW6_001

3D structure

PDB id

6WW6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of EutV bound to RNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UCG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WW6_001 not in the Motif Atlas

Geometric match to IL_5MWI_002

Geometric discrepancy: 0.194

The information below is about IL_5MWI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6WW6|1|C|U|32||A
6WW6|1|C|C|33||A
6WW6|1|C|G|34||A
*
6WW6|1|C|C|45||A
6WW6|1|C|C|46||A
6WW6|1|C|A|47||A

Current chains

Chain C

eutP P2

Nearby chains

Chain B

Response regulator

Chain F

eutP P2