IL_6WYV_001

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WYV_001 not in the Motif Atlas

Geometric match to IL_5J7L_245

Geometric discrepancy: 0.0822

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6WYV|1|I|G|24
6WYV|1|I|U|25
6WYV|1|I|G|26
6WYV|1|I|G|27
6WYV|1|I|A|28
6WYV|1|I|U|29
6WYV|1|I|G|30
*
6WYV|1|I|C|510
6WYV|1|I|U|511
6WYV|1|I|G|512
6WYV|1|I|A|513
6WYV|1|I|A|514
6WYV|1|I|A|515
6WYV|1|I|C|516

Current chains

Chain I

23S ribosomal RNA

Nearby chains