IL_6WYV_009

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WYV_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3489

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6WYV|1|I|C|274
6WYV|1|I|C|275
6WYV|1|I|U|276
6WYV|1|I|G|277
6WYV|1|I|A|278
6WYV|1|I|A|279
6WYV|1|I|U|280
6WYV|1|I|C|281
*
6WYV|1|I|G|359
6WYV|1|I|U|360
6WYV|1|I|G|361
6WYV|1|I|A|362
6WYV|1|I|G|363

Current chains

Chain I

23S ribosomal RNA

Nearby chains