IL_6WYV_011

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

6WYV|1|I|A|504, 6WYV|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WYV_011 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.3055

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

6WYV|1|I|G|481
6WYV|1|I|A|482
6WYV|1|I|A|483
6WYV|1|I|C|484
*
6WYV|1|I|G|496
6WYV|1|I|A|497
6WYV|1|I|G|498
6WYV|1|I|U|499
6WYV|1|I|G|500
6WYV|1|I|A|501
6WYV|1|I|A|502
6WYV|1|I|A|503
6WYV|1|I|A|504
6WYV|1|I|A|505
6WYV|1|I|G|506
6WYV|1|I|A|507
6WYV|1|I|A|508
6WYV|1|I|C|509

Current chains

Chain I

23S ribosomal RNA

Nearby chains