IL_6WYV_029

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WYV_029 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.3559

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6WYV|1|I|G|875
6WYV|1|I|C|876
6WYV|1|I|A|877
6WYV|1|I|A|878
6WYV|1|I|G|879
*
6WYV|1|I|C|898
6WYV|1|I|A|899
6WYV|1|I|A|900
6WYV|1|I|C|901
6WYV|1|I|C|902

Current chains

Chain I

23S ribosomal RNA

Nearby chains